MCP Server MCP

Cytoscape Desktop MCP

By github 👁 1 views ▲ 0 votes

Drive a running Cytoscape Desktop to load, lay out, and style biological networks.

Homepage Verified source GitHub

Install

mcpb:https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb

Configuration Example

{
  "remotes": [],
  "packages": [
    {
      "registryType": "mcpb",
      "identifier": "https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb",
      "fileSha256": "587db028294397065f071af1b0d2130daaf26be14fd936c9d540dc1cacf00d3c",
      "transport": {
        "type": "stdio"
      },
      "environmentVariables": [
        {
          "description": "Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)",
          "default": "1234",
          "name": "CYREST_PORT"
        }
      ]
    },
    {
      "registryType": "npm",
      "identifier": "@cytoscape/cytoscape-desktop-mcp-bridge",
      "version": "1.0.3",
      "transport": {
        "type": "stdio"
      },
      "environmentVariables": [
        {
          "description": "Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)",
          "default": "1234",
          "name": "CYREST_PORT"
        }
      ]
    }
  ]
}

mcp model-context-protocol mcpb npm