MCP Server MCP

io.github.galaxyproject/galaxy-mcp

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MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Homepage Verified source GitHub

Install

uvx galaxy-mcp

Configuration Example

{
  "remotes": [],
  "packages": [
    {
      "registryType": "pypi",
      "identifier": "galaxy-mcp",
      "version": "1.3.0",
      "transport": {
        "type": "stdio"
      },
      "environmentVariables": [
        {
          "description": "URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)",
          "isRequired": true,
          "format": "string",
          "name": "GALAXY_URL"
        },
        {
          "description": "API key for authenticating with the Galaxy instance",
          "isRequired": true,
          "format": "string",
          "isSecret": true,
          "name": "GALAXY_API_KEY"
        }
      ]
    }
  ]
}

mcp model-context-protocol pypi