MCP Server MCP

io.github.rachadele/biolit

By github 👁 1 views ▲ 0 votes

LLM-assisted biomedical literature screening and extraction for PubMed, GEO, and preprints.

Homepage Verified source GitHub

Install

uvx biolit

Configuration Example

{
  "remotes": [],
  "packages": [
    {
      "registryType": "pypi",
      "identifier": "biolit",
      "version": "0.1.25",
      "transport": {
        "type": "stdio"
      },
      "environmentVariables": [
        {
          "description": "Anthropic API key (required when using the default Anthropic provider)",
          "format": "string",
          "isSecret": true,
          "name": "ANTHROPIC_API_KEY"
        },
        {
          "description": "OpenAI API key (required when using LLM_PROVIDER=openai)",
          "format": "string",
          "isSecret": true,
          "name": "OPENAI_API_KEY"
        },
        {
          "description": "LLM provider: anthropic (default), openai, or ollama",
          "format": "string",
          "name": "LLM_PROVIDER"
        },
        {
          "description": "Model name override (e.g. claude-sonnet-4-6, gpt-4o)",
          "format": "string",
          "name": "LLM_MODEL"
        },
        {
          "description": "Semantic Scholar API key for higher rate limits on citation lookup (optional)",
          "format": "string",
          "isSecret": true,
          "name": "SEMANTIC_SCHOLAR_API_KEY"
        },
        {
          "description": "Email address for Unpaywall API access to improve PDF retrieval (optional)",
          "format": "string",
          "name": "UNPAYWALL_EMAIL"
        }
      ]
    }
  ]
}

mcp model-context-protocol pypi